All modules for which code is available

• dendropy.calculate.phylogeneticdistance
• dendropy.calculate.popgenstat
• dendropy.calculate.probability
• dendropy.calculate.statistics
• dendropy.calculate.treecompare
• dendropy.calculate.treemeasure
• dendropy.dataio.fastareader
• dendropy.dataio.fastawriter
• dendropy.dataio.newickreader
• dendropy.dataio.newickwriter
• dendropy.dataio.nexmlreader
• dendropy.dataio.nexmlwriter
• dendropy.dataio.nexusreader
• dendropy.dataio.nexuswriter
• dendropy.dataio.phylipreader
• dendropy.dataio.phylipwriter
• dendropy.datamodel.basemodel
• dendropy.datamodel.charmatrixmodel
• dendropy.datamodel.charstatemodel
• dendropy.datamodel.datasetmodel
• dendropy.datamodel.taxonmodel
• dendropy.datamodel.treecollectionmodel
• dendropy.datamodel.treemodel._bipartition
• dendropy.datamodel.treemodel._edge
• dendropy.datamodel.treemodel._node
• dendropy.datamodel.treemodel._tree
• dendropy.model.birthdeath
• dendropy.model.coalescent
• dendropy.model.continuous
• dendropy.model.discrete
• dendropy.model.parsimony
• dendropy.model.protractedspeciation
• dendropy.model.reconcile
• dendropy.model.treeshape
• dendropy.simulate.popgensim
• dendropy.simulate.treesim
• dendropy.utility.bibtex