1. Basic frameworks and mechanisms
  • (Just enough) Julia for scientific informatics, modeling, and reasoning
  • Introduction
  • Basic frameworks and mechanisms
    • Orientation
    • Basics of setting up and running Julia
    • Basics of visualizing mathematical models
    • Basics of working with randomness and probabilities
    • Basics of working with data tables
  • Basics of specialized workflows
    • Basics of paleobiological fossil collection analyses
    • Basics of agent-based modeling: spatial epidemic dynamics with Agents.jl
      • Basics of agent-based modeling: spatial epidemic dynamics with Agents.jl
    • Basics of species distribution modeling
  • Primers
    • Bernoulli trial
    • Pathogen fitness as a function of virulence (Frank, 1996)
    • Virulence-transmission trade-off (Frank, 1996)
    • Julia – Environments – Global vs project
    • Julia: Functions, methods, and signatures
    • Markov property
    • Probabilty distributions–Essential concepts
    • Pseudo-random number generators
    • Pseudo-random number generators: best practices
    • Pseudo-random number generators: continuous values from discrete machines
Author

Jeet Sukumaran

Chapter 1. Orientation

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Synopsis Requirements References

Chapter 2. Basics of setting up and running Julia

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Chapter 3. Basics of visualizing mathematical models

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Model: Single-lineage parasite virulence evolution

Chapter 4. Basics of working with randomness and probabilities

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Chapter 5. Basics of working with data tables

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(Just enough) Julia for scientific informatics, modeling, and reasoning
Orientation
  • © Jeet Sukumaran

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