1. (Just enough) Julia for scientific informatics, modeling, and reasoning
  • (Just enough) Julia for scientific informatics, modeling, and reasoning
  • Introduction
  • Basic frameworks and mechanisms
    • Orientation
    • Basics of setting up and running Julia
    • Basics of visualizing mathematical models
    • Basics of working with randomness and probabilities
    • Basics of working with data tables
  • Basics of specialized workflows
    • Basics of paleobiological fossil collection analyses
    • Basics of agent-based modeling: spatial epidemic dynamics with Agents.jl
      • Basics of agent-based modeling: spatial epidemic dynamics with Agents.jl
    • Basics of species distribution modeling
  • Primers
    • Bernoulli trial
    • Pathogen fitness as a function of virulence (Frank, 1996)
    • Virulence-transmission trade-off (Frank, 1996)
    • Julia – Environments – Global vs project
    • Julia: Functions, methods, and signatures
    • Markov property
    • Probabilty distributions–Essential concepts
    • Pseudo-random number generators
    • Pseudo-random number generators: best practices
    • Pseudo-random number generators: continuous values from discrete machines

(Just enough) Julia for scientific informatics, modeling, and reasoning

An operational learning approach to the essential computational competencies you need for your research, from ideas to publication and beyond

  • Practicals
  • Primers

Chapter 1. Orientation

Chapter 2. Basics of setting up and running Julia

Chapter 3. Basics of visualizing mathematical models

Chapter 4. Basics of working with randomness and probabilities

Chapter 5. Basics of working with data tables

Chapter 6. Basics of species distribution modeling

Chapter 7. Basics of paleobiological fossil collection analyses

Chapter 8. Basics of agent-based modeling: spatial epidemic dynamics with Agents.jl

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Chapter 1. Bernoulli trial

Chapter 2. Julia – Environments – Global vs project

Chapter 3. Julia: Functions, methods, and signatures

Chapter 4. Markov property

Chapter 5. Pathogen fitness as a function of virulence (Frank, 1996)

Chapter 6. Probabilty distributions–Essential concepts

Chapter 7. Pseudo-random number generators

Chapter 8. Pseudo-random number generators: best practices

Chapter 9. Pseudo-random number generators: continuous values from discrete machines

Chapter 10. Virulence-transmission trade-off (Frank, 1996)

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Basic frameworks and mechanisms
  • © Jeet Sukumaran

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